Detailed information of SNP:
|
SNP ID:
sf1124611830(Gbrowse)
Chromosome: chr11 Position: 24611830 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 63.02% | 36.98% |
| All Indica | 795 | 47.92% | 52.08% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 63 | 39.68% | 60.32% |
| Indica I | 374 | 32.09% | 67.91% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 208 | 62.02% | 37.98% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124611830 | A->G | INTERGENIC | None |