Detailed information of SNP:
|
SNP ID:
sf1124612713(Gbrowse)
Chromosome: chr11 Position: 24612713 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 76.11% | 23.89% |
| All Indica | 795 | 63.52% | 36.48% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 374 | 58.82% | 41.18% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124612713 | G->T | INTERGENIC | None |