Detailed information of SNP:
|
SNP ID:
sf1124613609(Gbrowse)
Chromosome: chr11 Position: 24613609 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 798 | 65.91% | 34.09% |
| All Japonica | 496 | 39.52% | 60.48% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 63.47% | 36.53% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 35.52% | 64.48% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124613609 | G->T | INTERGENIC | None |