Detailed information of SNP:
|
SNP ID:
sf1124613728(Gbrowse)
Chromosome: chr11 Position: 24613728 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 56.43% | 43.57% |
| All Indica | 797 | 65.87% | 34.13% |
| All Japonica | 496 | 39.31% | 60.69% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 63.37% | 36.63% |
| Indica II | 213 | 57.75% | 42.25% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 35.22% | 64.78% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124613728 | T->C | INTERGENIC | None |