Detailed information of SNP:
|
SNP ID:
sf1124614143(Gbrowse)
Chromosome: chr11 Position: 24614143 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 89.92% | 10.08% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 496 | 80.65% | 19.35% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 334 | 74.25% | 25.75% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124614143 | T->C | INTERGENIC | None |