Detailed information of SNP:
|
SNP ID:
sf1124615151(Gbrowse)
Chromosome: chr11 Position: 24615151 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 54.47% | 45.53% |
| All Indica | 795 | 62.14% | 37.86% |
| All Japonica | 492 | 39.63% | 60.37% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 58.71% | 41.29% |
| Indica II | 212 | 55.19% | 44.81% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 330 | 34.85% | 65.15% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124615151 | A->G | INTERGENIC | None |