Detailed information of SNP:
|
SNP ID:
sf1124616258(Gbrowse)
Chromosome: chr11 Position: 24616258 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 72.99% | 27.01% |
| All Indica | 799 | 75.34% | 24.66% |
| All Japonica | 479 | 68.89% | 31.11% |
| Aus | 63 | 63.49% | 36.51% |
| Indica I | 375 | 65.60% | 34.40% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 319 | 64.58% | 35.42% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 66 | 51.52% | 48.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124616258 | C->T | INTERGENIC | None |