Detailed information of SNP:
|
SNP ID:
sf1124616786(Gbrowse)
Chromosome: chr11 Position: 24616786 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 66.69% | 33.31% |
| All Indica | 792 | 72.73% | 27.27% |
| All Japonica | 497 | 58.15% | 41.85% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 371 | 63.61% | 36.39% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124616786 | T->C | INTERGENIC | None |