Detailed information of SNP:
|
SNP ID:
sf1124617968(Gbrowse)
Chromosome: chr11 Position: 24617968 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 67.30% | 32.70% |
| All Indica | 795 | 73.21% | 26.79% |
| All Japonica | 496 | 58.47% | 41.53% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 334 | 58.98% | 41.02% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124617968 | T->C | INTERGENIC | None |