Detailed information of SNP:
|
SNP ID:
sf1124618655(Gbrowse)
Chromosome: chr11 Position: 24618655 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 67.16% | 32.84% |
| All Indica | 799 | 74.72% | 25.28% |
| All Japonica | 497 | 58.75% | 41.25% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 64.53% | 35.47% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 58.81% | 41.19% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124618655 | A->G | INTERGENIC | None |