Detailed information of SNP:
|
SNP ID:
sf1124619782(Gbrowse)
Chromosome: chr11 Position: 24619782 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 66.55% | 33.45% |
| All Indica | 797 | 74.40% | 25.60% |
| All Japonica | 497 | 57.55% | 42.45% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 373 | 64.08% | 35.92% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124619782 | T->C | INTERGENIC | None |