Detailed information of SNP:
|
SNP ID:
sf1124619793(Gbrowse)
Chromosome: chr11 Position: 24619793 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 93.51% | 6.49% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 93.73% | 6.27% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124619793 | G->A | INTERGENIC | None |