Detailed information of SNP:
|
SNP ID:
sf1124621510(Gbrowse)
Chromosome: chr11 Position: 24621510 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 98.93% | 1.07% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 486 | 96.91% | 3.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 85.23% | 14.77% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124621510 | G->T | INTERGENIC | None |