Detailed information of SNP:
|
SNP ID:
sf1124621652(Gbrowse)
Chromosome: chr11 Position: 24621652 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 57.42% | 42.58% |
| All Indica | 790 | 57.85% | 42.15% |
| All Japonica | 491 | 63.14% | 36.86% |
| Aus | 54 | 3.70% | 96.30% |
| Indica I | 372 | 55.65% | 44.35% |
| Indica II | 212 | 55.66% | 44.34% |
| Indica Intermediate | 206 | 64.08% | 35.92% |
| Temperate Japonica | 330 | 58.18% | 41.82% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124621652 | A->G | INTERGENIC | None |