Detailed information of SNP:
|
SNP ID:
sf1124622976(Gbrowse)
Chromosome: chr11 Position: 24622976 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 67.21% | 32.79% |
| All Indica | 797 | 64.99% | 35.01% |
| All Japonica | 496 | 77.22% | 22.78% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 209 | 73.21% | 26.79% |
| Temperate Japonica | 334 | 83.53% | 16.47% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124622976 | A->G | INTERGENIC | None |