Detailed information of SNP:
|
SNP ID:
sf1124623116(Gbrowse)
Chromosome: chr11 Position: 24623116 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 65.61% | 34.39% |
| All Indica | 799 | 72.59% | 27.41% |
| All Japonica | 497 | 58.55% | 41.45% |
| Aus | 64 | 31.25% | 68.75% |
| Indica I | 375 | 65.33% | 34.67% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 58.81% | 41.19% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124623116 | A->G | INTERGENIC | None |