Detailed information of SNP:
|
SNP ID:
sf1124623579(Gbrowse)
Chromosome: chr11 Position: 24623579 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 58.60% | 41.40% |
| All Indica | 793 | 42.62% | 57.38% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 31.20% | 68.80% |
| Indica II | 213 | 59.62% | 40.38% |
| Indica Intermediate | 205 | 45.85% | 54.15% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124623579 | G->T | INTERGENIC | None |