Detailed information of SNP:
|
SNP ID:
sf1124638339(Gbrowse)
Chromosome: chr11 Position: 24638339 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 77.98% | 22.02% |
| All Indica | 793 | 98.49% | 1.51% |
| All Japonica | 492 | 43.70% | 56.30% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 331 | 33.84% | 66.16% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124638339 | A->G | LOC_Os11g41780(LOC_Os11g41780.1) | INTRON |