Detailed information of SNP:
|
SNP ID:
sf1124639338(Gbrowse)
Chromosome: chr11 Position: 24639338 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 78.07% | 21.93% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 496 | 43.35% | 56.65% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 34.13% | 65.87% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124639338 | A->G | LOC_Os11g41780(LOC_Os11g41780.1) | Non-Synonymous SNP |