Detailed information of SNP:
|
SNP ID:
sf1124639822(Gbrowse)
Chromosome: chr11 Position: 24639822 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 63.35% | 36.65% |
| All Indica | 790 | 90.76% | 9.24% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 368 | 95.65% | 4.35% |
| Indica II | 212 | 82.55% | 17.45% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124639822 | G->A | LOC_Os11g41780(LOC_Os11g41780.1) | Synonymous |