Detailed information of SNP:
|
SNP ID:
sf1124642334(Gbrowse)
Chromosome: chr11 Position: 24642334 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 88.34% | 11.66% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 375 | 74.13% | 25.87% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124642334 | G->A | INTERGENIC | None |