Detailed information of SNP:
|
SNP ID:
sf1124644414(Gbrowse)
Chromosome: chr11 Position: 24644414 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 77.18% | 22.82% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 410 | 32.68% | 67.32% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 258 | 15.89% | 84.11% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 59 | 61.02% | 38.98% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124644414 | A->G | INTERGENIC | None |