Detailed information of SNP:
|
SNP ID:
sf1124647230(Gbrowse)
Chromosome: chr11 Position: 24647230 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 60.01% | 39.99% |
| All Indica | 799 | 70.71% | 29.29% |
| All Japonica | 497 | 39.44% | 60.56% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 211 | 64.45% | 35.55% |
| Temperate Japonica | 335 | 31.94% | 68.06% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124647230 | T->C | LOC_Os11g41800(LOC_Os11g41800.1) | Non-Synonymous SNP |