Detailed information of SNP:



SNP ID: sf1124647230(Gbrowse)

Chromosome: chr11

Position: 24647230
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 60.01% 39.99%
All Indica799 70.71% 29.29%
All Japonica497 39.44% 60.56%
Aus67 82.09% 17.91%
Indica I375 69.33% 30.67%
Indica II213 79.34% 20.66%
Indica Intermediate211 64.45% 35.55%
Temperate Japonica335 31.94% 68.06%
Tropical Japonica94 51.06% 48.94%
Japonica Intermediate68 60.29% 39.71%
Group VI/Aromatic14 28.57% 71.43%
Intermediate41 75.61% 24.39%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1124647230 T->C LOC_Os11g41800(LOC_Os11g41800.1) Non-Synonymous SNP