Detailed information of SNP:
|
SNP ID:
sf1124647591(Gbrowse)
Chromosome: chr11 Position: 24647591 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 67.65% | 32.35% |
| All Indica | 773 | 82.54% | 17.46% |
| All Japonica | 493 | 40.77% | 59.23% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 364 | 73.63% | 26.37% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 201 | 87.06% | 12.94% |
| Temperate Japonica | 335 | 33.73% | 66.27% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124647591 | T->C | INTERGENIC | None |