Detailed information of SNP:
|
SNP ID:
sf1124647793(Gbrowse)
Chromosome: chr11 Position: 24647793 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 78.41% | 21.59% |
| All Indica | 797 | 98.75% | 1.25% |
| All Japonica | 489 | 43.35% | 56.65% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 33.13% | 66.87% |
| Tropical Japonica | 86 | 67.44% | 32.56% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124647793 | C->T | INTERGENIC | None |