Detailed information of SNP:
|
SNP ID:
sf1124650462(Gbrowse)
Chromosome: chr11 Position: 24650462 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 63.31% | 36.69% |
| All Indica | 782 | 90.66% | 9.34% |
| All Japonica | 497 | 23.54% | 76.46% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 202 | 83.66% | 16.34% |
| Indica Intermediate | 205 | 89.27% | 10.73% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124650462 | A->G | INTERGENIC | None |