Detailed information of SNP:
|
SNP ID:
sf1124650465(Gbrowse)
Chromosome: chr11 Position: 24650465 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 63.43% | 36.57% |
| All Indica | 781 | 90.91% | 9.09% |
| All Japonica | 497 | 23.54% | 76.46% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 203 | 83.25% | 16.75% |
| Indica Intermediate | 204 | 90.20% | 9.80% |
| Temperate Japonica | 335 | 8.96% | 91.04% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124650465 | G->T | INTERGENIC | None |