Detailed information of SNP:
|
SNP ID:
sf1124651365(Gbrowse)
Chromosome: chr11 Position: 24651365 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 74.93% | 25.07% |
| All Indica | 768 | 94.53% | 5.47% |
| All Japonica | 493 | 42.19% | 57.81% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 358 | 93.30% | 6.70% |
| Indica II | 206 | 97.09% | 2.91% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 334 | 32.93% | 67.07% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124651365 | T->C | INTERGENIC | None |