Detailed information of SNP:
|
SNP ID:
sf1124655562(Gbrowse)
Chromosome: chr11 Position: 24655562 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 77.24% | 22.76% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 42.86% | 57.14% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 33.43% | 66.57% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124655562 | T->C | INTERGENIC | None |