Detailed information of SNP:
|
SNP ID:
sf1124659577(Gbrowse)
Chromosome: chr11 Position: 24659577 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 80.83% | 19.17% |
| All Indica | 799 | 69.59% | 30.41% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124659577 | G->C | INTERGENIC | None |