Detailed information of SNP:
|
SNP ID:
sf1124660214(Gbrowse)
Chromosome: chr11 Position: 24660214 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 73.32% | 26.68% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 495 | 35.35% | 64.65% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 17.66% | 82.34% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124660214 | T->C | INTERGENIC | None |