Detailed information of SNP:
|
SNP ID:
sf1124665735(Gbrowse)
Chromosome: chr11 Position: 24665735 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1302 | 93.01% | 6.99% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 382 | 78.01% | 21.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 237 | 66.24% | 33.76% |
| Tropical Japonica | 87 | 98.85% | 1.15% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124665735 | T->C | INTERGENIC | None |