Detailed information of SNP:
|
SNP ID:
sf1124671482(Gbrowse)
Chromosome: chr11 Position: 24671482 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 61.07% | 38.93% |
| All Indica | 791 | 47.16% | 52.84% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 62 | 46.77% | 53.23% |
| Indica I | 373 | 65.42% | 34.58% |
| Indica II | 211 | 24.64% | 75.36% |
| Indica Intermediate | 207 | 37.20% | 62.80% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 63.24% | 36.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124671482 | G->A | INTERGENIC | None |