Detailed information of SNP:
|
SNP ID:
sf1124673077(Gbrowse)
Chromosome: chr11 Position: 24673077 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 74.86% | 25.14% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 495 | 34.14% | 65.86% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 15.32% | 84.68% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124673077 | T->A | INTERGENIC | None |