Detailed information of SNP:
|
SNP ID:
sf1124677492(Gbrowse)
Chromosome: chr11 Position: 24677492 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 92.66% | 7.34% |
| All Indica | 797 | 89.71% | 10.29% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124677492 | A->G | INTERGENIC | None |