Detailed information of SNP:
|
SNP ID:
sf1124679292(Gbrowse)
Chromosome: chr11 Position: 24679292 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 75.71% | 24.29% |
| All Indica | 796 | 63.69% | 36.31% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 66.13% | 33.87% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 209 | 48.33% | 51.67% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124679292 | T->G | INTERGENIC | None |