Detailed information of SNP:
|
SNP ID:
sf1124680319(Gbrowse)
Chromosome: chr11 Position: 24680319 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 93.71% | 6.29% |
| All Indica | 796 | 90.70% | 9.30% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124680319 | T->C | INTERGENIC | None |