Detailed information of SNP:
|
SNP ID:
sf1124681177(Gbrowse)
Chromosome: chr11 Position: 24681177 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 88.47% | 11.53% |
| All Indica | 798 | 84.59% | 15.41% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 63 | 66.67% | 33.33% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 68.10% | 31.90% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124681177 | G->A | INTERGENIC | None |