Detailed information of SNP:
|
SNP ID:
sf1124681907(Gbrowse)
Chromosome: chr11 Position: 24681907 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.40% | 47.60% |
| All Indica | 798 | 32.33% | 67.67% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 36.27% | 63.73% |
| Indica II | 212 | 32.55% | 67.45% |
| Indica Intermediate | 211 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124681907 | C->T | INTERGENIC | None |