Detailed information of SNP:
|
SNP ID:
sf1124681979(Gbrowse)
Chromosome: chr11 Position: 24681979 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 52.85% | 47.15% |
| All Indica | 785 | 34.39% | 65.61% |
| All Japonica | 495 | 81.01% | 18.99% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 371 | 38.27% | 61.73% |
| Indica II | 204 | 34.80% | 65.20% |
| Indica Intermediate | 210 | 27.14% | 72.86% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124681979 | G->A | INTERGENIC | None |