Detailed information of SNP:
|
SNP ID:
sf1124687346(Gbrowse)
Chromosome: chr11 Position: 24687346 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 66.67% | 33.33% |
| All Indica | 796 | 58.67% | 41.33% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 64 | 37.50% | 62.50% |
| Indica I | 375 | 65.60% | 34.40% |
| Indica II | 212 | 51.89% | 48.11% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124687346 | G->A | INTERGENIC | None |