Detailed information of SNP:
|
SNP ID:
sf1124687817(Gbrowse)
Chromosome: chr11 Position: 24687817 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 62.23% | 37.77% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 8.45% | 91.55% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124687817 | C->A | LOC_Os11g41830(LOC_Os11g41830.1) | Non-Synonymous SNP |