Detailed information of SNP:
|
SNP ID:
sf1124696709(Gbrowse)
Chromosome: chr11 Position: 24696709 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.25% | 32.75% |
| All Indica | 799 | 49.81% | 50.19% |
| All Japonica | 495 | 89.70% | 10.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 38.67% | 61.33% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124696709 | C->T | INTERGENIC | None |