Detailed information of SNP:
|
SNP ID:
sf1124696796(Gbrowse)
Chromosome: chr11 Position: 24696796 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 68.99% | 31.01% |
| All Indica | 799 | 49.81% | 50.19% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 38.67% | 61.33% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124696796 | C->T | INTERGENIC | None |