Detailed information of SNP:
|
SNP ID:
sf1124697415(Gbrowse)
Chromosome: chr11 Position: 24697415 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.50% | 36.50% |
| All Indica | 799 | 52.82% | 47.18% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 61.87% | 38.13% |
| Indica II | 213 | 41.78% | 58.22% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124697415 | C->T | INTERGENIC | None |