Detailed information of SNP:
|
SNP ID:
sf1124705027(Gbrowse)
Chromosome: chr11 Position: 24705027 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 70.53% | 29.47% |
| All Indica | 758 | 54.62% | 45.38% |
| All Japonica | 477 | 93.71% | 6.29% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 370 | 67.84% | 32.16% |
| Indica II | 187 | 41.71% | 58.29% |
| Indica Intermediate | 201 | 42.29% | 57.71% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 76 | 73.68% | 26.32% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124705027 | C->T | INTERGENIC | None |