Detailed information of SNP:
|
SNP ID:
sf1124705165(Gbrowse)
Chromosome: chr11 Position: 24705165 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 75.18% | 24.82% |
| All Indica | 797 | 62.48% | 37.52% |
| All Japonica | 494 | 94.33% | 5.67% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 68.10% | 31.90% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 211 | 63.51% | 36.49% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124705165 | A->G | INTERGENIC | None |