Detailed information of SNP:
|
SNP ID:
sf1124708990(Gbrowse)
Chromosome: chr11 Position: 24708990 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 83.07% | 16.93% |
| All Indica | 795 | 74.59% | 25.41% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 374 | 61.23% | 38.77% |
| Indica II | 212 | 81.60% | 18.40% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124708990 | G->A | LOC_Os11g41870(LOC_Os11g41870.1) | UTR_3_PRIME |