Detailed information of SNP:
|
SNP ID:
sf1124719077(Gbrowse)
Chromosome: chr11 Position: 24719077 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 55.95% | 44.05% |
| All Indica | 794 | 30.10% | 69.90% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 39.78% | 60.22% |
| Indica II | 211 | 29.86% | 70.14% |
| Indica Intermediate | 211 | 13.27% | 86.73% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124719077 | C->T | INTERGENIC | None |