Detailed information of SNP:
|
SNP ID:
sf1124719238(Gbrowse)
Chromosome: chr11 Position: 24719238 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 65.50% | 34.50% |
| All Indica | 782 | 48.21% | 51.79% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 65 | 52.31% | 47.69% |
| Indica I | 363 | 63.09% | 36.91% |
| Indica II | 212 | 40.57% | 59.43% |
| Indica Intermediate | 207 | 29.95% | 70.05% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1124719238 | A->T | INTERGENIC | None |